IL_6ZVI_012

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZVI|1|h|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1176

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZVI|1|h|G|143
6ZVI|1|h|U|144
6ZVI|1|h|A|145
6ZVI|1|h|U|146
6ZVI|1|h|A|147
6ZVI|1|h|A|148
6ZVI|1|h|C|149
*
6ZVI|1|h|G|165
6ZVI|1|h|C|166
6ZVI|1|h|U|167
6ZVI|1|h|A|168
6ZVI|1|h|A|169
6ZVI|1|h|U|170
6ZVI|1|h|A|171
6ZVI|1|h|C|172

Current chains

Chain h

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S24-A

Chain o

40S ribosomal protein S6-A