IL_6ZVI_080

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_080 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1119

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZVI|1|h|G|1638
6ZVI|1|h|C|1639
6ZVI|1|h|C|1640
6ZVI|1|h|C|1641
*
6ZVI|1|h|G|1760
6ZVI|1|h|U|1761
6ZVI|1|h|A|1762
6ZVI|1|h|A|1763
6ZVI|1|h|C|1764

Current chains

Chain h

18S rRNA

Nearby chains

Chain e

Transfer RNA; tRNA

Chain f

mRNA