IL_6ZVJ_032

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_032 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3122

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZVJ|1|2|U|566
6ZVJ|1|2|C|567
6ZVJ|1|2|C|568
6ZVJ|1|2|A|569
*
6ZVJ|1|2|U|581
6ZVJ|1|2|U|582
6ZVJ|1|2|A|583
6ZVJ|1|2|A|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

ATP-binding cassette sub-family E member 1

Chain c

40S ribosomal protein S9

Chain z

40S ribosomal protein S24