IL_6ZVJ_053

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_053 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1187

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6ZVJ|1|2|C|1047
6ZVJ|1|2|G|1048
6ZVJ|1|2|A|1049
6ZVJ|1|2|A|1050
6ZVJ|1|2|G|1051
*
6ZVJ|1|2|C|1067
6ZVJ|1|2|G|1068
6ZVJ|1|2|U|1069
6ZVJ|1|2|A|1070
6ZVJ|1|2|G|1071

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Eukaryotic translation initiation factor 1

Chain Q

40S ribosomal protein S26

Chain i

40S ribosomal protein S14