IL_6ZVK_025
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|628, 6ZVK|1|K3|U|630, 6ZVK|1|K3|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_025 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1839
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|K3|G|611
6ZVK|1|K3|U|612
6ZVK|1|K3|G|613
6ZVK|1|K3|C|614
6ZVK|1|K3|C|615
6ZVK|1|K3|A|616
6ZVK|1|K3|G|617
*
6ZVK|1|K3|C|624
6ZVK|1|K3|G|625
6ZVK|1|K3|G|626
6ZVK|1|K3|U|627
6ZVK|1|K3|A|628
6ZVK|1|K3|A|629
6ZVK|1|K3|U|630
6ZVK|1|K3|U|631
6ZVK|1|K3|C|632
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain T3
- Ribosomal protein S23
- Chain Y3
- Ribosomal protein S3
- Chain s3
- 40S RIBOSOMAL PROTEIN ES30
Coloring options: