IL_6ZVK_043

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_043 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.129

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZVK|1|K3|G|942
6ZVK|1|K3|U|943
6ZVK|1|K3|A|944
6ZVK|1|K3|U|945
*
6ZVK|1|K3|A|981
6ZVK|1|K3|G|982
6ZVK|1|K3|A|983
6ZVK|1|K3|C|984

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain O3

40S RIBOSOMAL PROTEIN ES26

Chain V3

40S ribosomal protein S3a

Chain a5

40S RIBOSOMAL PROTEIN US11