IL_6ZVK_060

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUGG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_060 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2555

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZVK|1|K3|U|1346
6ZVK|1|K3|U|1347
6ZVK|1|K3|G|1348
6ZVK|1|K3|G|1349
*
6ZVK|1|K3|C|1380
6ZVK|1|K3|G|1381
6ZVK|1|K3|A|1382
6ZVK|1|K3|A|1383

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

40S RIBOSOMAL PROTEIN ES17

Chain U3

40S_SA_C domain-containing protein

Chain W3

S5 DRBM domain-containing protein

Chain Y3

Ribosomal protein S3