IL_6ZVK_107
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_107 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.1536
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZVK|1|e2|G|415
6ZVK|1|e2|U|416
6ZVK|1|e2|G|417
6ZVK|1|e2|A|418
6ZVK|1|e2|A|419
6ZVK|1|e2|A|420
6ZVK|1|e2|C|421
*
6ZVK|1|h2|G|13
6ZVK|1|h2|U|14
6ZVK|1|h2|G|15
6ZVK|1|h2|G|16
6ZVK|1|h2|A|17
6ZVK|1|h2|U|18
6ZVK|1|h2|C|19
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain H2
- uL22
- Chain t2
- uL4
- Chain v2
- eL32
Coloring options: