IL_6ZVK_115

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|C|502, 6ZVK|1|e2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_115 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.302

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6ZVK|1|e2|G|500
6ZVK|1|e2|C|501
6ZVK|1|e2|C|502
6ZVK|1|e2|C|503
6ZVK|1|e2|G|504
6ZVK|1|e2|G|505
*
6ZVK|1|e2|U|653
6ZVK|1|e2|C|654

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain t2

uL4