IL_6ZVK_159
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_159 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2221
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|e2|C|1910
6ZVK|1|e2|G|1911
6ZVK|1|e2|C|1912
6ZVK|1|e2|C|1913
6ZVK|1|e2|C|1914
6ZVK|1|e2|G|1915
6ZVK|1|e2|A|1916
6ZVK|1|e2|U|1917
*
6ZVK|1|e2|G|2063
6ZVK|1|e2|G|2064
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain U2
- uL30
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
- Chain x2
- eL33
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