IL_6ZVK_162
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|1929, 6ZVK|1|e2|C|1930, 6ZVK|1|e2|G|2054, 6ZVK|1|e2|A|2056
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_162 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.225
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|e2|C|1925
6ZVK|1|e2|U|1926
6ZVK|1|e2|C|1927
6ZVK|1|e2|A|1928
6ZVK|1|e2|U|1929
6ZVK|1|e2|C|1930
6ZVK|1|e2|A|1931
6ZVK|1|e2|G|1932
*
6ZVK|1|e2|C|2052
6ZVK|1|e2|U|2053
6ZVK|1|e2|G|2054
6ZVK|1|e2|G|2055
6ZVK|1|e2|A|2056
6ZVK|1|e2|G|2057
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain W2
- 60S RIBOSOMAL PROTEIN UL6
- Chain Z2
- Ribosomal protein L14
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
Coloring options: