IL_6ZVK_165

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6ZVK|1|e2|U|1958, 6ZVK|1|e2|A|1959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_165 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.4021

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZVK|1|e2|U|1956
6ZVK|1|e2|A|1957
6ZVK|1|e2|U|1958
6ZVK|1|e2|A|1959
6ZVK|1|e2|G|1960
6ZVK|1|e2|A|1961
6ZVK|1|e2|C|1962
6ZVK|1|e2|A|1963
6ZVK|1|e2|G|1964
*
6ZVK|1|e2|C|2021
6ZVK|1|e2|C|2022
6ZVK|1|e2|G|2023
6ZVK|1|e2|A|2024
6ZVK|1|e2|A|2025

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain K2

60S acidic ribosomal protein P0