IL_6ZVK_170
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_170 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.2522
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6ZVK|1|e2|C|2290
6ZVK|1|e2|G|2291
6ZVK|1|e2|C|2292
*
6ZVK|1|e2|G|2342
6ZVK|1|e2|G|2343
6ZVK|1|e2|U|2344
6ZVK|1|e2|G|2345
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- 60S RIBOSOMAL PROTEIN EL28
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain q2
- uL15
- Chain t2
- uL4
- Chain v2
- eL32
Coloring options: