IL_6ZVK_174

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_174 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1144

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZVK|1|e2|G|2358
6ZVK|1|e2|U|2359
6ZVK|1|e2|A|2360
6ZVK|1|e2|G|2361
6ZVK|1|e2|U|2362
6ZVK|1|e2|A|2363
6ZVK|1|e2|G|2364
*
6ZVK|1|e2|C|3858
6ZVK|1|e2|G|3859
6ZVK|1|e2|A|3860
6ZVK|1|e2|A|3861
6ZVK|1|e2|A|3862
6ZVK|1|e2|C|3863

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain H2

uL22

Chain t2

uL4

Chain v2

eL32