IL_6ZVK_179

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_179 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.232

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6ZVK|1|e2|C|2589
6ZVK|1|e2|G|2590
6ZVK|1|e2|A|2591
6ZVK|1|e2|U|2592
6ZVK|1|e2|C|2593
*
6ZVK|1|e2|G|2752
6ZVK|1|e2|G|2753
6ZVK|1|e2|G|2754
6ZVK|1|e2|A|2755
6ZVK|1|e2|G|2756

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain y2

eL34