IL_6ZVK_185
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|2661, 6ZVK|1|e2|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_185 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1801
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZVK|1|e2|U|2656
6ZVK|1|e2|G|2657
6ZVK|1|e2|G|2658
6ZVK|1|e2|A|2659
6ZVK|1|e2|A|2660
6ZVK|1|e2|U|2661
6ZVK|1|e2|G|2662
*
6ZVK|1|e2|C|2672
6ZVK|1|e2|G|2673
6ZVK|1|e2|A|2674
6ZVK|1|e2|G|2675
6ZVK|1|e2|A|2676
6ZVK|1|e2|G|2677
6ZVK|1|e2|A|2678
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 13
- Ribosomal protein L30
- Chain 22
- 60S ribosomal protein L27
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain F3
- ribosomal protein uS15
- Chain I2
- ribosomal protein eL43
- Chain y2
- eL34
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