IL_6ZVK_187

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_187 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1583

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|A|2832
6ZVK|1|e2|A|2833
6ZVK|1|e2|C|2834
6ZVK|1|e2|A|2835
6ZVK|1|e2|A|2836
6ZVK|1|e2|U|2837
6ZVK|1|e2|G|2838
*
6ZVK|1|e2|C|3850
6ZVK|1|e2|U|3851
6ZVK|1|e2|A|3852
6ZVK|1|e2|U|3853

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22

Chain u2

eL31