IL_6ZVK_232
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_232 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.148
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZVK|1|e2|C|4596
6ZVK|1|e2|U|4597
6ZVK|1|e2|C|4598
6ZVK|1|e2|A|4599
6ZVK|1|e2|G|4600
6ZVK|1|e2|U|4601
6ZVK|1|e2|A|4602
6ZVK|1|e2|C|4603
*
6ZVK|1|e2|G|4608
6ZVK|1|e2|G|4609
6ZVK|1|e2|A|4610
6ZVK|1|e2|A|4611
6ZVK|1|e2|C|4612
6ZVK|1|e2|C|4613
6ZVK|1|e2|G|4614
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain W2
- 60S RIBOSOMAL PROTEIN UL6
- Chain k2
- eL14
Coloring options: