IL_6ZVK_237
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_237 not in the Motif Atlas
- Homologous match to IL_5TBW_120
- Geometric discrepancy: 0.2762
- The information below is about IL_5TBW_120
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6ZVK|1|e2|A|4681
6ZVK|1|e2|U|4682
6ZVK|1|e2|U|4683
6ZVK|1|e2|A|4684
6ZVK|1|e2|U|4685
*
6ZVK|1|e2|A|4705
6ZVK|1|e2|G|4706
6ZVK|1|e2|A|4707
6ZVK|1|e2|A|4708
6ZVK|1|e2|U|4709
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain W2
- 60S RIBOSOMAL PROTEIN UL6
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
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