3D structure

PDB id
6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.49 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
6ZVK|1|e2|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZVK_237 not in the Motif Atlas
Homologous match to IL_5TBW_120
Geometric discrepancy: 0.2762
The information below is about IL_5TBW_120
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6ZVK|1|e2|A|4681
6ZVK|1|e2|U|4682
6ZVK|1|e2|U|4683
6ZVK|1|e2|A|4684
6ZVK|1|e2|U|4685
*
6ZVK|1|e2|A|4705
6ZVK|1|e2|G|4706
6ZVK|1|e2|A|4707
6ZVK|1|e2|A|4708
6ZVK|1|e2|U|4709

Current chains

Chain e2
28S RIBOSOMAL RNA

Nearby chains

Chain E2
60S RIBOSOMAL PROTEIN EL40
Chain W2
60S RIBOSOMAL PROTEIN UL6
Chain w2
60S RIBOSOMAL PROTEIN UL13

Coloring options:


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