IL_6ZVK_251

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_251 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1962

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZVK|1|e2|G|5000
6ZVK|1|e2|U|5001
6ZVK|1|e2|U|5002
*
6ZVK|1|e2|G|5045
6ZVK|1|e2|U|5046
6ZVK|1|e2|C|5047
6ZVK|1|e2|A|5048
6ZVK|1|e2|G|5049
6ZVK|1|e2|C|5050

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain l2

Ribosomal protein L24

Chain u2

eL31