IL_6ZVK_268
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GACU*AUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_268 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2022
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6ZVK|1|K3|G|1536
6ZVK|1|K3|A|1537
6ZVK|1|K3|C|1538
6ZVK|1|K3|U|1539
*
6ZVK|1|K3|A|1594
6ZVK|1|K3|U|1595
6ZVK|1|K3|U|1596
6ZVK|1|K3|C|1597
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G5
- ribosomal protein uS13
- Chain H5
- 40S RIBOSOMAL PROTEIN ES19
- Chain M3
- ribosomal protein eS25
- Chain N3
- Ribosomal protein S5
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