IL_6ZVK_290
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|1153, 6ZVK|1|K3|U|1155, 6ZVK|1|K3|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_290 not in the Motif Atlas
- Homologous match to IL_8CRE_439
- Geometric discrepancy: 0.1903
- The information below is about IL_8CRE_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZVK|1|K3|C|1091
6ZVK|1|K3|G|1092
6ZVK|1|K3|A|1093
*
6ZVK|1|K3|U|1152
6ZVK|1|K3|C|1153
6ZVK|1|K3|U|1154
6ZVK|1|K3|U|1155
6ZVK|1|K3|U|1156
6ZVK|1|K3|G|1157
6ZVK|1|K3|G|1158
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain T3
- Ribosomal protein S23
- Chain W3
- S5 DRBM domain-containing protein
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