IL_6ZXD_071
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXD_071 not in the Motif Atlas
- Geometric match to IL_5TBW_100
- Geometric discrepancy: 0.2727
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6ZXD|1|2|U|1346
6ZXD|1|2|U|1347
6ZXD|1|2|G|1348
6ZXD|1|2|G|1349
*
6ZXD|1|2|C|1380
6ZXD|1|2|G|1381
6ZXD|1|2|A|1382
6ZXD|1|2|A|1383
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein SA
- Chain C
- 40S ribosomal protein S2
- Chain D
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S17
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