IL_6ZXE_014

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZXE|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXE_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1155

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZXE|1|2|G|145
6ZXE|1|2|G|146
6ZXE|1|2|A|147
6ZXE|1|2|U|148
6ZXE|1|2|A|149
6ZXE|1|2|A|150
6ZXE|1|2|C|151
*
6ZXE|1|2|G|167
6ZXE|1|2|C|168
6ZXE|1|2|U|169
6ZXE|1|2|A|170
6ZXE|1|2|A|171
6ZXE|1|2|U|172
6ZXE|1|2|A|173
6ZXE|1|2|C|174

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24