IL_6ZXE_034

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXE_034 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1029

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6ZXE|1|2|A|599
6ZXE|1|2|G|600
6ZXE|1|2|G|601
6ZXE|1|2|G|602
6ZXE|1|2|C|603
6ZXE|1|2|A|604
6ZXE|1|2|A|605
6ZXE|1|2|G|606
*
6ZXE|1|2|C|636
6ZXE|1|2|U|637

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30