IL_6ZXE_052

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZXE|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXE_052 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.14

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZXE|1|2|G|952
6ZXE|1|2|C|953
6ZXE|1|2|U|954
6ZXE|1|2|A|955
6ZXE|1|2|G|956
*
6ZXE|1|2|C|967
6ZXE|1|2|U|968
6ZXE|1|2|U|969
6ZXE|1|2|G|970
6ZXE|1|2|G|971
6ZXE|1|2|A|972
6ZXE|1|2|C|973
6ZXE|1|2|C|974

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14