IL_6ZXE_075
3D structure
- PDB id
- 6ZXE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUGG*CCAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXE_075 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3308
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ZXE|1|2|A|1537
6ZXE|1|2|C|1538
6ZXE|1|2|U|1539
6ZXE|1|2|G|1540
6ZXE|1|2|G|1541
*
6ZXE|1|2|C|1592
6ZXE|1|2|C|1593
6ZXE|1|2|A|1594
6ZXE|1|2|U|1595
6ZXE|1|2|U|1596
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S19
- Chain Z
- 40S ribosomal protein S25
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