IL_6ZXH_076

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6ZXH|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_076 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3317

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6ZXH|1|2|C|1395
6ZXH|1|2|A|1396
6ZXH|1|2|U|1397
6ZXH|1|2|G|1398
6ZXH|1|2|C|1399
*
6ZXH|1|2|G|1447
6ZXH|1|2|A|1448
6ZXH|1|2|G|1449
6ZXH|1|2|G|1450

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain R

40S ribosomal protein S17

Chain U

40S ribosomal protein S20

Chain g

Receptor of activated protein C kinase 1