IL_7A01_018
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7A01|1|K3|U|361, 7A01|1|K3|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_018 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.2732
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7A01|1|K3|U|359
7A01|1|K3|A|360
7A01|1|K3|U|361
7A01|1|K3|C|362
7A01|1|K3|A|363
7A01|1|K3|A|364
*
7A01|1|K3|U|396
7A01|1|K3|G|397
7A01|1|K3|A|398
7A01|1|K3|C|399
7A01|1|K3|C|400
7A01|1|K3|A|401
7A01|1|K3|C|402
7A01|1|K3|G|403
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain T3
- Ribosomal protein S23
- Chain c3
- 40S ribosomal protein S8
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