IL_7A01_049
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_049 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1912
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7A01|1|K3|C|1047
7A01|1|K3|G|1048
7A01|1|K3|A|1049
7A01|1|K3|A|1050
7A01|1|K3|G|1051
*
7A01|1|K3|C|1067
7A01|1|K3|G|1068
7A01|1|K3|U|1069
7A01|1|K3|A|1070
7A01|1|K3|G|1071
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain 92
- Uncharacterized protein
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain a5
- Uncharacterized protein
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: