IL_7A01_056
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7A01|1|K3|C|1215, 7A01|1|K3|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_056 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.2642
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7A01|1|K3|A|1214
7A01|1|K3|C|1215
7A01|1|K3|C|1216
7A01|1|K3|A|1217
*
7A01|1|K3|U|1681
7A01|1|K3|C|1682
7A01|1|K3|C|1683
7A01|1|K3|C|1684
7A01|1|K3|U|1685
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain N3
- Ribosomal protein S5
- Chain f3
- ribosomal protein eS28
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