IL_7A01_133

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGC*GUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_133 not in the Motif Atlas

Geometric match to IL_8VMA_004

Geometric discrepancy: 0.3805

The information below is about IL_8VMA_004

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7A01|1|e2|G|749
7A01|1|e2|U|750
7A01|1|e2|G|751
7A01|1|e2|G|752
7A01|1|e2|C|753
*
7A01|1|e2|G|910
7A01|1|e2|U|911
7A01|1|e2|G|912
7A01|1|e2|U|913
7A01|1|e2|U|914

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain W2

Uncharacterized protein