IL_8VMA_004

3D structure

PDB id

8VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.54 Å

Loop

Sequence

CUCCU*ACUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8VMA|1|C|C|51
8VMA|1|C|U|52
8VMA|1|C|C|53
8VMA|1|C|C|54
8VMA|1|C|U|55
*
8VMA|1|C|A|71
8VMA|1|C|C|72
8VMA|1|C|U|73
8VMA|1|C|U|74
8VMA|1|C|G|75

Current chains

Chain C

RNA (88-MER)

Nearby chains

Chain L

Light Chain of Fab BL3-6