IL_7A01_173
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7A01|1|e2|U|1929, 7A01|1|e2|C|1930, 7A01|1|e2|G|2054, 7A01|1|e2|A|2056
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_173 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2305
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|e2|C|1925
7A01|1|e2|U|1926
7A01|1|e2|C|1927
7A01|1|e2|A|1928
7A01|1|e2|U|1929
7A01|1|e2|C|1930
7A01|1|e2|A|1931
7A01|1|e2|G|1932
*
7A01|1|e2|C|2052
7A01|1|e2|U|2053
7A01|1|e2|G|2054
7A01|1|e2|G|2055
7A01|1|e2|A|2056
7A01|1|e2|G|2057
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 02
- Ribosomal protein L14
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain W2
- Uncharacterized protein
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
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