IL_7A01_185

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_185 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1465

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7A01|1|e2|G|2358
7A01|1|e2|U|2359
7A01|1|e2|A|2360
7A01|1|e2|G|2361
7A01|1|e2|U|2362
7A01|1|e2|A|2363
7A01|1|e2|G|2364
*
7A01|1|e2|C|3858
7A01|1|e2|G|3859
7A01|1|e2|A|3860
7A01|1|e2|A|3861
7A01|1|e2|A|3862
7A01|1|e2|C|3863

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain H2

uL22

Chain t2

uL4