IL_7A01_190

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_190 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.3423

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7A01|1|e2|C|2589
7A01|1|e2|G|2590
7A01|1|e2|A|2591
7A01|1|e2|U|2592
7A01|1|e2|C|2593
*
7A01|1|e2|G|2752
7A01|1|e2|G|2753
7A01|1|e2|G|2754
7A01|1|e2|A|2755
7A01|1|e2|G|2756

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain 92

Uncharacterized protein

Chain y2

eL34