IL_7A01_205
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7A01|1|e2|A|3663, 7A01|1|e2|U|3679, 7A01|1|e2|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_205 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.1558
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|e2|C|3660
7A01|1|e2|G|3661
7A01|1|e2|A|3662
7A01|1|e2|A|3663
7A01|1|e2|G|3664
7A01|1|e2|G|3665
*
7A01|1|e2|U|3677
7A01|1|e2|G|3678
7A01|1|e2|U|3679
7A01|1|e2|U|3680
7A01|1|e2|G|3681
7A01|1|e2|A|3682
7A01|1|e2|C|3683
7A01|1|e2|G|3684
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 92
- Uncharacterized protein
- Chain I2
- ribosomal protein eL43
- Chain K3
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: