IL_7A01_246
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACAUUU*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 7A01|1|e2|C|4670
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_246 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3829
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|e2|A|4624
7A01|1|e2|C|4625
7A01|1|e2|A|4626
7A01|1|e2|U|4627
7A01|1|e2|U|4628
7A01|1|e2|U|4629
*
7A01|1|e2|A|4669
7A01|1|e2|C|4670
7A01|1|e2|C|4671
7A01|1|e2|A|4672
7A01|1|e2|U|4673
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain k2
- eL14
- Chain l2
- Ribosomal protein L24
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