IL_7A01_263

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7A01|1|e2|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_263 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2145

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7A01|1|e2|G|5000
7A01|1|e2|U|5001
7A01|1|e2|U|5002
*
7A01|1|e2|G|5045
7A01|1|e2|U|5046
7A01|1|e2|C|5047
7A01|1|e2|A|5048
7A01|1|e2|G|5049
7A01|1|e2|C|5050

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain u2

eL31