IL_7A01_284

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_284 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.378

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7A01|1|K3|A|1651
7A01|1|K3|G|1652
7A01|1|K3|U|1653
7A01|1|K3|G|1654
*
7A01|1|K3|C|1670
7A01|1|K3|G|1671
7A01|1|K3|U|1672
7A01|1|K3|U|1673

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

Uncharacterized protein

Chain H5

Uncharacterized protein

Chain I3

Ribosomal_S10 domain-containing protein

Chain N3

Ribosomal protein S5