IL_7A09_095
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7A09|1|2|U|361, 7A09|1|2|C|399, 7A09|1|2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A09_095 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1316
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7A09|1|2|U|359
7A09|1|2|A|360
7A09|1|2|U|361
7A09|1|2|C|362
7A09|1|2|A|363
7A09|1|2|A|364
*
7A09|1|2|U|396
7A09|1|2|G|397
7A09|1|2|A|398
7A09|1|2|C|399
7A09|1|2|C|400
7A09|1|2|A|401
7A09|1|2|C|402
7A09|1|2|G|403
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C,Eukaryotic translation initiation factor 3 subunit C,Eukaryotic translation initiation factor 3 subunit C
- Chain j
- 40S ribosomal protein S23
- Chain n
- 40S ribosomal protein S11
- Chain t
- 40S ribosomal protein S8
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