IL_8C3A_410

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8C3A|1|CM|U|311, 8C3A|1|CM|C|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8C3A|1|CM|U|309
8C3A|1|CM|A|310
8C3A|1|CM|U|311
8C3A|1|CM|C|312
8C3A|1|CM|A|313
8C3A|1|CM|A|314
*
8C3A|1|CM|U|346
8C3A|1|CM|U|347
8C3A|1|CM|U|348
8C3A|1|CM|C|349
8C3A|1|CM|A|350
8C3A|1|CM|A|351
8C3A|1|CM|C|352
8C3A|1|CM|G|353

Current chains

Chain CM

18S

Nearby chains

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A

Chain DK

Ribosomal protein S23 (S12)