IL_7A1G_098
3D structure
- PDB id
- 7A1G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7A1G|1|2|C|1274, 7A1G|1|2|U|1432, 7A1G|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A1G_098 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1009
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7A1G|1|2|U|1272
7A1G|1|2|G|1273
7A1G|1|2|C|1274
7A1G|1|2|A|1275
7A1G|1|2|U|1276
7A1G|1|2|G|1277
7A1G|1|2|G|1278
*
7A1G|1|2|U|1430
7A1G|1|2|C|1431
7A1G|1|2|U|1432
7A1G|1|2|G|1433
7A1G|1|2|U|1434
7A1G|1|2|G|1435
7A1G|1|2|A|1436
7A1G|1|2|U|1437
7A1G|1|2|G|1438
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain C
- 40S ribosomal protein S10-A
- Chain K
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
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