IL_7A5F_008

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7A5F|1|A3|G|2011, 7A5F|1|A3|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_008 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1556

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7A5F|1|A3|G|1906
7A5F|1|A3|A|1907
7A5F|1|A3|A|1908
7A5F|1|A3|A|1909
7A5F|1|A3|C|1910
*
7A5F|1|A3|G|2009
7A5F|1|A3|U|2010
7A5F|1|A3|G|2011
7A5F|1|A3|A|2012
7A5F|1|A3|U|2013
7A5F|1|A3|A|2014
7A5F|1|A3|G|2015
7A5F|1|A3|C|2016

Current chains

Chain A3

16S rRNA

Nearby chains

Chain F3

39S ribosomal protein L4, mitochondrial

Chain M3

39S ribosomal protein L15, mitochondrial

Chain i3

39S ribosomal protein L51, mitochondrial