IL_7A5F_025

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_025 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1444

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7A5F|1|A3|G|2470
7A5F|1|A3|G|2471
7A5F|1|A3|A|2472
7A5F|1|A3|A|2473
*
7A5F|1|A3|U|2656
7A5F|1|A3|C|2657

Current chains

Chain A3

16S rRNA

Nearby chains

Chain E3

39S ribosomal protein L3, mitochondrial

Chain L3

39S ribosomal protein L14, mitochondrial

Chain Q3

39S ribosomal protein L19, mitochondrial