IL_7A5F_032

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

7A5F|1|A3|A|2601, 7A5F|1|A3|U|2607, 7A5F|1|A3|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_032 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.5636

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7A5F|1|A3|C|2597
7A5F|1|A3|A|2598
7A5F|1|A3|U|2599
7A5F|1|A3|A|2600
7A5F|1|A3|A|2601
7A5F|1|A3|U|2602
7A5F|1|A3|C|2603
7A5F|1|A3|A|2604
7A5F|1|A3|C|2605
7A5F|1|A3|U|2606
7A5F|1|A3|U|2607
7A5F|1|A3|G|2608
*
7A5F|1|A3|C|2624
7A5F|1|A3|C|2625
7A5F|1|A3|U|2626
7A5F|1|A3|G|2627

Current chains

Chain A3

16S rRNA

Nearby chains

Chain 24

Transfer RNA; tRNA

Chain A6

Small subunit ribosomal RNA; SSU rRNA

Chain d6

Aurora kinase A-interacting protein