IL_7A5F_087

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

7A5F|1|A6|A|1330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_087 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.2059

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7A5F|1|A6|C|1269
7A5F|1|A6|A|1270
*
7A5F|1|A6|U|1329
7A5F|1|A6|A|1330
7A5F|1|A6|G|1331

Current chains

Chain A6

12S rRNA

Nearby chains

Chain C6

28S ribosomal protein S24, mitochondrial

Chain D6

28S ribosomal protein S5, mitochondrial

Chain H6

28S ribosomal protein S10, mitochondrial

Chain K6

28S ribosomal protein S14, mitochondrial