IL_7ABZ_016

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ABZ|1|1|G|801, 7ABZ|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1444

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|G|674
7ABZ|1|1|A|675
7ABZ|1|1|A|676
7ABZ|1|1|A|677
7ABZ|1|1|C|678
*
7ABZ|1|1|G|799
7ABZ|1|1|A|800
7ABZ|1|1|G|801
7ABZ|1|1|A|802
7ABZ|1|1|U|803
7ABZ|1|1|A|804
7ABZ|1|1|G|805
7ABZ|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15