IL_7ABZ_044

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7ABZ|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1803

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7ABZ|1|1|C|1208
7ABZ|1|1|U|1209
7ABZ|1|1|G|1210
7ABZ|1|1|C|1211
7ABZ|1|1|G|1212
7ABZ|1|1|A|1213
7ABZ|1|1|A|1214
7ABZ|1|1|G|1215
*
7ABZ|1|1|U|1234
7ABZ|1|1|G|1235
7ABZ|1|1|G|1236
7ABZ|1|1|A|1237
7ABZ|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20