IL_7ABZ_069

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7ABZ|1|1|A|1801, 7ABZ|1|1|C|1816, 7ABZ|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_069 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1136

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ABZ|1|1|U|1798
7ABZ|1|1|G|1799
7ABZ|1|1|C|1800
7ABZ|1|1|A|1801
7ABZ|1|1|A|1802
7ABZ|1|1|A|1803
7ABZ|1|1|C|1804
*
7ABZ|1|1|G|1813
7ABZ|1|1|G|1814
7ABZ|1|1|A|1815
7ABZ|1|1|C|1816
7ABZ|1|1|G|1817
7ABZ|1|1|U|1818
7ABZ|1|1|A|1819
7ABZ|1|1|U|1820
7ABZ|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2